Commits · a714181f12de33195dd612a1a50a766ee1f1821e · MPBA Radiomics / RADLER

28 Oct, 2019 25 commits
- Radiomics pipeline repo · a714181f
  Alessia Marcolini authored Oct 28, 2019
  
  a714181f
- LSVM DAP · 32ce2db1
  Alessia Marcolini authored Oct 28, 2019
  
  32ce2db1
- Fix typo · d3965b94
  Alessia Marcolini authored Oct 28, 2019
  
  d3965b94
- PEP8 + use tqdm · 7e68928f
  Alessia Marcolini authored Oct 28, 2019
  
  7e68928f
- save train/test metrics · 87f2a5d7
  Nicole Bussola authored Oct 28, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  87f2a5d7
- fix label check · 9571af1b
  Nicole Bussola authored Oct 27, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  9571af1b
- save svg plot · de66ba91
  Nicole Bussola authored Oct 23, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  de66ba91
- extract deep features from backbone network · 25bc3cc0
  Nicole Bussola authored Oct 23, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  25bc3cc0
- UMAP projection on deep features with binary T-stages labels · 37b8c165
  Nicole Bussola authored Oct 23, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  37b8c165
- implement patient-wise splitting protocol for augmented dataset · 608db4ad
  Nicole Bussola authored Oct 22, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  608db4ad
- add patient-wise splitting · e751d783
  Nicole Bussola authored Oct 22, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  e751d783
- REMOVE SOFTMAX AFTER THE LAST LINEAR LAYER, CROSSENTROPY LOSS ALREADY INCLUDES SOFTMAX · ab5c881d
  Alessia Marcolini authored Oct 22, 2019
  
  ab5c881d
- Remove not used networks · 30c1d40b
  Alessia Marcolini authored Oct 22, 2019
  
  30c1d40b
- Handle modality in a single network · 4486ce8d
  Alessia Marcolini authored Oct 22, 2019
  
  4486ce8d
- dataset augmentation · 7c0eac2a
  Nicole Bussola authored Oct 22, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  7c0eac2a
- change NumpyCSVDataset to handle augmented dataset · 84ff7c91
  Nicole Bussola authored Oct 22, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  84ff7c91
- Suppress warning on kaiming_normal weight init · adfc442b
  Alessia Marcolini authored Oct 21, 2019
  
  adfc442b
- Specify the modality (CT, PET, CT/PET) to train on · e83ea040
  Alessia Marcolini authored Oct 21, 2019
  
  e83ea040
- Fix import of dicom_utils · f1b2474d
  Alessia Marcolini authored Oct 21, 2019
  
  f1b2474d
- Add Ciompi networks with single branch · 527fd5f7
  Alessia Marcolini authored Oct 21, 2019
  
  527fd5f7
- Add ResNet50_3d network · e00600ff
  Alessia Marcolini authored Oct 21, 2019
  
  e00600ff
- add function to crop instead of resizing · 9a499905
  Nicole Bussola authored Oct 18, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  9a499905
- fix path · 40b03001
  Nicole Bussola authored Oct 18, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  40b03001
- fix edge case when subset of patients is selected, given by clinical file · 6a6a12c1
  Nicole Bussola authored Oct 18, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  6a6a12c1
- extract roi of size 64, print exception info · a31e23e3
  Nicole Bussola authored Oct 17, 2019 and Alessia Marcolini committed Oct 28, 2019
  
  a31e23e3
16 Oct, 2019 10 commits
- Ignore tensorboard folder and output redirection files · f3afb243
  Alessia Marcolini authored Oct 16, 2019
  
  f3afb243
- Save labels as str · 577832a7
  Alessia Marcolini authored Oct 16, 2019
  
  577832a7
- Read labels csv as str, PEP8 style formatting · 0cc3ac68
  Alessia Marcolini authored Oct 16, 2019
  
  0cc3ac68
- Fix validation loop during training, refactoring · db1c9dc3
  Alessia Marcolini authored Oct 16, 2019
  
  db1c9dc3
- Update clinical data filename · 3aa8c733
  Alessia Marcolini authored Oct 16, 2019
  
  3aa8c733
- IPython magic to handle environment path setup · 894e27e2
  Alessia Marcolini authored Oct 16, 2019
  
  894e27e2
- Binarize T-stage clinical variable · b1140f1d
  Alessia Marcolini authored Oct 16, 2019
  
  b1140f1d
- Ignore dicom_utils folder · 8a786f38
  Alessia Marcolini authored Oct 16, 2019
  
  8a786f38
- Conversion string to int of categorical labels, and PEP8 style formatting · da921218
  Alessia Marcolini authored Oct 16, 2019
  
  da921218
- Fix import of dicom_utils lib · 157df619
  Alessia Marcolini authored Oct 16, 2019
  
  157df619
15 Oct, 2019 1 commit
- HN Special Issue · 86c3e001
  Andrea Bizzego authored Oct 15, 2019
  
  86c3e001
13 Feb, 2019 3 commits
- thesis version' · c13d7e3b
  Andrea Bizzego authored Feb 13, 2019
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  c13d7e3b
- merge ... · 1dc94755
  Andrea Bizzego authored Feb 13, 2019
  
  1dc94755
- merging... · ee923166
  Andrea Bizzego authored Feb 13, 2019
  
  ee923166
17 Jan, 2019 1 commit
- results report, mess · 43c6a8c8
  Andrea Bizzego authored Jan 17, 2019
  
  43c6a8c8