Commit 9694000b authored by Alessia Marcolini's avatar Alessia Marcolini
Browse files

Back to original features out filename

parent bd7a2a85
#%%
import os
import warnings
from pathlib import Path
import SimpleITK as sitk
import numpy as np
import pandas as pd
import SimpleITK as sitk
from tqdm import tqdm
from pyradiomics_radler import MyRadiomicsFeaturesExtractor as RadiomicsFeatureExtractor
from multiproc import ListMultiprocessing
import warnings
from pyradiomics_radler import MyRadiomicsFeaturesExtractor as RadiomicsFeatureExtractor
warnings.filterwarnings("ignore")
# %%
# os.chdir('..')
DATASET = Path('HN_BZ')
DATASET = Path('HN_val')
BBOX = 'bbox_64_rad'
VOXEL_SPACING = (1.0, 1.0, 1.0)
SCAN_NAMES = ['CT', 'PT']
......@@ -28,7 +28,7 @@ PIXEL_SPACING = [1.0, 2.0, 3.0, 4.0, 5.0]
#%%
DATADIR = Path('data') / DATASET / 'processed' / 'bbox' / BBOX
OUTDIR = Path('data') / DATASET / 'processed'
OUTFILE = f'radiomics_features_{BBOX}_1.csv' # output file name
OUTFILE = f'radiomics_features_{BBOX}.csv' # output file name
clinical = pd.read_csv(Path('data') / DATASET / 'processed' / f'clinical_{DATASET}.csv')
......
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