Handle patients

radiomics_pipeline/feature_selection/feature_selection.py

@@ -47,9 +47,10 @@ def create_param_grid(params):
 
 
 # %%
-FEATURE_NAME = 'merged_radiomics_features_F_SVC_Locoregional.csv_features_noTx_F_SVC_Locoregional.csv' #'radiomics_features'#'features_noTx'  #Tstage_binary_augmented_noTx_branch_wise_20191025-160304'
+FEATURE_NAME = 'features_noTx_AUG' # 'radiomics_features'#  #Tstage_binary_augmented_noTx_branch_wise_20191025-160304'
 FEATUREFILE = f'{FEATURE_NAME}.csv'
 LAB_COL = 'Locoregional'
+PATIENT_COL = 'patient'
 EXP = 'LR_noTx_branch_wise_free_aug_CT_20191027-124913'
 OUTFILE = f'{FEATURE_NAME}_F_SVC_{LAB_COL}.csv'
 
@@ -74,7 +75,7 @@ LABELFILE = f'{PATH}/data/clinical_data_noTx.csv'
 features = pd.read_csv(f'{FEATDIR}/{FEATUREFILE}', index_col =0)
 labels = pd.read_csv(LABELFILE, index_col =0)[LAB_COL].to_frame()
 features = pd.merge(features, labels, left_index=True, right_index=True)
-
+features.pop(PATIENT_COL)
 labels = features.pop(LAB_COL).to_frame()
 
 X = features.values