Commits · 7cf535be5f7fae67a29638529f92edfd0452f892 · MPBA / INF

02 Dec, 2019 7 commits
- Extract tiles from SVS · 7cf535be
  Alessia Marcolini authored Dec 02, 2019
  
  7cf535be
- Initial INF package structure · 5548a6d3
  Alessia Marcolini authored Dec 02, 2019
  
  5548a6d3
- Custom histology library · 7737f279
  Alessia Marcolini authored Dec 02, 2019
  
  7737f279
- Add link for openslide · 50b49c41
  Alessia Marcolini authored Dec 02, 2019
  
  50b49c41
- Fix specs · ce934c85
  Alessia Marcolini authored Dec 02, 2019
  
  ce934c85
- Merge branch 'master' of gitlab.fbk.eu:MPBA/inf_revamped · 2f219768
  Alessia Marcolini authored Dec 02, 2019
  
  2f219768
- Add environment file · 4296736a
  Alessia Marcolini authored Dec 02, 2019
  
  4296736a
28 Nov, 2019 8 commits
- Added support for data splits to Snakefile · fa0ecd8d
  Marco Chierici authored Nov 28, 2019
  
  fa0ecd8d
- Added multiclass support (not tested yet :)) · 14d2515f
  Marco Chierici authored Nov 28, 2019
  
  14d2515f
- Merge branch 'master' of gitlab.fbk.eu:MPBA/inf_revamped · 0dda140d
  Alessia Marcolini authored Nov 28, 2019
  
  0dda140d
- Add script to download tissue slides from TCGA · 68546ea4
  Alessia Marcolini authored Nov 28, 2019
  
  68546ea4
- Added k='all' in SelectKBest (Nicole didn't commit!) · 8a5e66c1
  Marco Chierici authored Nov 28, 2019
  
  8a5e66c1
- Dropped unused imports; minor improvements · 0492a38e
  Marco Chierici authored Nov 28, 2019
  
  0492a38e
- Added LabelEncoder support · a128b05f
  Marco Chierici authored Nov 28, 2019
  
  a128b05f
- Added LabelEncoder, removed old code chunks · 13d5f927
  Marco Chierici authored Nov 28, 2019
  
  13d5f927
27 Nov, 2019 1 commit
- Update .gitignore · 870ddde5
  Marco Chierici authored Nov 27, 2019
  
  870ddde5
25 Nov, 2019 5 commits
- Remove extra slashes · 6d443098
  Alessia Marcolini authored Nov 25, 2019
  
  6d443098
- Ignore vscode folder · 92680d29
  Alessia Marcolini authored Nov 25, 2019
  
  92680d29
- Fix dataset folder · 7ccd4647
  Alessia Marcolini authored Nov 25, 2019
  
  7ccd4647
- Updated README, runner.sh · cd000267
  Marco Chierici authored Nov 25, 2019
  
  cd000267
- Brand new Snakefile replaces Makefile · dd9fed29
  Marco Chierici authored Nov 25, 2019
  
  dd9fed29
21 Nov, 2019 14 commits
- Use context managers to open and close files, PEP8 · efc71c39
  alessiamarcolini authored Nov 21, 2019
  
  efc71c39
- added runner · 9d50804a
  Nicole Bussola authored Nov 21, 2019
  
  9d50804a
- Updated: metrics file format, confidence intervals calculations, etc. · 72fea010
  Marco Chierici authored Nov 21, 2019
  
  72fea010
- fix conflict · adf3a331
  Nicole Bussola authored Nov 21, 2019
  
  adf3a331
- gene and prot run · 6f4e2688
  Nicole Bussola authored Nov 21, 2019
  
  6f4e2688
- Import only required modules from mlpy · 7507f448
  Marco Chierici authored Nov 21, 2019
  
  7507f448
- Updated FSTEPS calculation · bedbd3ad
  Marco Chierici authored Nov 21, 2019
  
  bedbd3ad
- Fix output folder · 132f421f
  alessiamarcolini authored Nov 21, 2019
  
  132f421f
- Remove print · e5790a28
  alessiamarcolini authored Nov 21, 2019
  
  e5790a28
- Ignore data and results folders · 597df333
  alessiamarcolini authored Nov 21, 2019
  
  597df333
- Fix data path · d355b689
  alessiamarcolini authored Nov 21, 2019
  
  d355b689
- Remove unused imports · e1ea42a1
  alessiamarcolini authored Nov 21, 2019
  
  e1ea42a1
- Create folder in Makefile · fc86cebf
  alessiamarcolini authored Nov 21, 2019
  
  fc86cebf
- Update runner.sh · 6cd191ae
  Marco Chierici authored Nov 21, 2019
  
  6cd191ae
20 Nov, 2019 5 commits
- fix path · 27b9be87
  Nicole Bussola authored Nov 20, 2019
  
  27b9be87
- Added jutaposed AG1-CNV data · 9cb8f1a9
  Marco Chierici authored Nov 20, 2019
  
  9cb8f1a9
- Added README; modified makefile · 9fb07cfe
  Marco Chierici authored Nov 20, 2019
  
  9fb07cfe
- Added runner script · 07a8a816
  Marco Chierici authored Nov 20, 2019
  
  07a8a816
- Added sample data · 060948b3
  Marco Chierici authored Nov 20, 2019
  
  060948b3