This example showed an example pipeline using three omics layers from BRCA-ER dataset. You can use an arbitrary number of omics layers by adding or removing `layer` arguments accordingly.
A maximum number of cores can also be set (default is 1):
```{python}
```bash
snakemake [--config etc.] --cores 12
snakemake [--config etc.] --cores 12
```
```
The pipeline can be "dry-run" using the `-n` flag:
The pipeline can be "dry-run" using the `-n` flag:
```{python}
```bash
snakemake --cores 12 -n
snakemake --cores 12 -n
```
```
A bash script (`runner.sh`) is provided for convenience, in order to run the pipeline for each split, to compute Borda of Bordas and to average metrics for all the splits.