Commit d355b689 authored by alessiamarcolini's avatar alessiamarcolini
Browse files

Fix data path

parent e1ea42a1
......@@ -2,16 +2,17 @@
# Example script for the INF pipeline
# output folder
OUT=results_tmp
OUT=results_breast
DATA_FOLDER=data/TCGA_data/Breast/INF
# prepare output tree
# go!
make all \
OUTBASE=${OUT} \
DATA1=data/AG1-G_145_LIT_ALL_tr.txt \
DATA2=data/CNV-G_145_LIT_ALL_tr.txt \
FILE=data/AG1-G_CNV-G_145_LIT_ALL_tr.txt \
LABEL=data/label_145_ALL-EFS_tr.lab \
ENDPOINT=ALL-EFS
DATA1=${DATA_FOLDER}/gene_tr.txt \
DATA2=${DATA_FOLDER}/cnv_tr.txt \
FILE=${DATA_FOLDER}/gene_cnv_tr.txt \
LABEL=${DATA_FOLDER}/labels_ER_tr.txt \
ENDPOINT=breast_ER
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