Commit 4515328f authored by Alessia Marcolini's avatar Alessia Marcolini
Browse files

Update runner according to DAP (full or accelerated) arguments

parent 9bee5124
...@@ -16,11 +16,18 @@ N_SPLITS_END=10 ...@@ -16,11 +16,18 @@ N_SPLITS_END=10
RANDOM_LABELS=false RANDOM_LABELS=false
snakefile=Snakefile_full
if [[ $1 = accelerated ]]
then
snakefile=Snakefile_accelerated
fi
# go! # go!
for (( i=$N_SPLITS_START; i<$N_SPLITS_END; i++ )) for (( i=$N_SPLITS_START; i<$N_SPLITS_END; i++ ))
do do
snakemake -s Snakefile_split --cores $CORES --config datafolder=$DATAFOLDER outfolder=$OUTFOLDER dataset=$DATASET target=$TARGET layer1=$LAYER1 layer2=$LAYER2 layer3=$LAYER3 model=$MODEL random=$RANDOM_LABELS split_id=$i -p snakemake -s $snakefile --cores $CORES --config datafolder=$DATAFOLDER outfolder=$OUTFOLDER dataset=$DATASET target=$TARGET layer1=$LAYER1 layer2=$LAYER2 layer3=$LAYER3 model=$MODEL random=$RANDOM_LABELS split_id=$i -p --dryrun
done done
if [ $RANDOM_LABELS = true ] if [ $RANDOM_LABELS = true ]
......
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