Add R data split generation

README.md

@@ -60,6 +60,16 @@ mv tcga* data
 ./runner.sh
 ``` 
 
+#### Data splits generation
+
+To recreate the 10 data splits, run the following commands in a shell:
+
+```bash
+Rscript scripts/prepare_ACGT.R --tumor aml --suffix 03 --datadir data/original/Shamir_lab --outdir data/tcga_aml
+Rscript scripts/prepare_ACGT.R --tumor kidney --suffix 01 --datadir data/original/Shamir_lab --outdir data/tcga_kirc
+Rscript scripts/prepare_BRCA.R --task ER --datadir data/original --outdir data/tcga_brca
+```
+
 #### Input files
 
 * Omics layer files: samples x features, tab-separated, with row & column names