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MPBA
INF
Commits
1b6eb13f
Commit
1b6eb13f
authored
Mar 31, 2020
by
Marco Chierici
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Add R data split generation
parent
c65381bb
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README.md
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@@ -60,6 +60,16 @@ mv tcga* data
./runner.sh
```
#### Data splits generation
To recreate the 10 data splits, run the following commands in a shell:
```
bash
Rscript scripts/prepare_ACGT.R
--tumor
aml
--suffix
03
--datadir
data/original/Shamir_lab
--outdir
data/tcga_aml
Rscript scripts/prepare_ACGT.R
--tumor
kidney
--suffix
01
--datadir
data/original/Shamir_lab
--outdir
data/tcga_kirc
Rscript scripts/prepare_BRCA.R
--task
ER
--datadir
data/original
--outdir
data/tcga_brca
```
#### Input files
*
Omics layer files: samples x features, tab-separated, with row & column names
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