Commit 1b6eb13f authored by Marco Chierici's avatar Marco Chierici
Browse files

Add R data split generation

parent c65381bb
......@@ -60,6 +60,16 @@ mv tcga* data
./runner.sh
```
#### Data splits generation
To recreate the 10 data splits, run the following commands in a shell:
```bash
Rscript scripts/prepare_ACGT.R --tumor aml --suffix 03 --datadir data/original/Shamir_lab --outdir data/tcga_aml
Rscript scripts/prepare_ACGT.R --tumor kidney --suffix 01 --datadir data/original/Shamir_lab --outdir data/tcga_kirc
Rscript scripts/prepare_BRCA.R --task ER --datadir data/original --outdir data/tcga_brca
```
#### Input files
* Omics layer files: samples x features, tab-separated, with row & column names
......
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