Commit 07a8a816 authored by Marco Chierici's avatar Marco Chierici
Browse files

Added runner script

parent 060948b3
#!/bin/bash
# Example script for the INF pipeline
# output folder
OUT=results_tmp
# prepare output tree
mkdir -p $OUT/juxt
mkdir -p $OUT/rSNF
mkdir -p $OUT/rSNFi
# go!
make -f run_INF_RF-KBest.mk \
OUTBASE=${OUT} \
# layer1 dataset
DATA1=data/AG1-G_145_LIT_ALL_tr.txt \
# layer2 dataset
DATA2=data/CNV-G_145_LIT_ALL_tr.txt \
# layer1 + layer2 juxtaposed dataset
FILE=data/AG1-G_CNV-G_145_LIT_ALL_tr.txt \
# sample labels
LABEL=data/label_145_ALL-EFS_tr.lab
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